Let me get this straight, you copied the original Application.xml for the default vhost which plays streams via a http client and rtmp.
The new vhost which you've created doesn't play streams via a http client but still plays the rtmp streams.
It sounds like you need to add :
cupertinostreaming,smoothstreaming,sanjosestreaming to HTTPStreamers section of the Application.xml in :
You may have added :
cupertinostreamingpacketizer,smoothstreamingpacketizer,sanjosestreamingpacketizer to LiveStreamPacketizers section which needs to be left blank.
when using a video on demand application.